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Pull requests: jwohlwend/boltz

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Pull requests list

Minor update on msa request timeout and recursive search of job definitions in directory.
#688 opened Jun 1, 2026 by neilswainston Loading…
Fix 4 bugs + add FlashAttention-2 / SDPA GPU acceleration (--flash_attn)
#682 opened May 18, 2026 by mooreneural Loading…
3
11
test: add regression test for CPU autocast device-type behavior
#671 opened Apr 13, 2026 by khanfs Loading…
fix: validate checkpoint files before loading and surface actionable errors for empty/corrupt weights
#668 opened Apr 2, 2026 by khanfs Loading…
1
Added timing to inference
#666 opened Mar 27, 2026 by Pablo-Lemos Loading…
docs: add Boltz-DAP link for multi-GPU inference
#661 opened Mar 18, 2026 by coqylight Loading…
Fold-CP: A Context Parallelism Framework for Biomolecular Modeling
#658 opened Mar 15, 2026 by DejunL Collaborator Loading…
@DejunL
use mol cache when tar archive missing
#656 opened Mar 13, 2026 by tlitfin Loading…
1
Add optional capture of transition MLP intermediates
#651 opened Mar 2, 2026 by vash02 Loading…
Added symmetry.pkl and ccd.rdb writing to the training data prep pipeline
#614 opened Nov 11, 2025 by chmnk Loading…
1
Add weighted RMSD validation and shared CIF writer
#610 opened Nov 5, 2025 by AlvandVahedi Loading…
Specify which device to run on
#603 opened Oct 25, 2025 by delalamo Loading…
2
Fixed --write_full_pae and --write_full_pde options. Fixes #585
#602 opened Oct 24, 2025 by tomgoddard Contributor Loading…
3
Replace urllib.request.urlretrieve with requests library
#601 opened Oct 24, 2025 by ianandersonlol Loading…
Add docker support for inference
#595 opened Oct 18, 2025 by juliocesar-io Loading…
Fix #583 parsing .csv MSA files removes paired sequences.
#584 opened Sep 26, 2025 by tomgoddard Contributor Loading…
1
Fix #581 constructing MSA feature array
#582 opened Sep 26, 2025 by tomgoddard Contributor Loading…
1
Only consider standard residues in consecutive CA filter
#576 opened Sep 17, 2025 by bcm49 Loading…
1
Allow template to have indel compared to the original sequence
#538 opened Aug 13, 2025 by shunsakuraba Loading…
1
Add basic support for mps (Apple Silicon) as an accelerator
#527 opened Aug 5, 2025 by colbyford Loading…
1
Add PDB loader helper & extend schema to accept pdb_file.
#517 opened Jul 30, 2025 by Bioparticles Loading…
Generify MinimumLengthFilter name
#516 opened Jul 29, 2025 by amorehead Loading…
Look up MSA files relative to input fasta/yaml
#500 opened Jul 22, 2025 by Emrys-Merlin Loading…
1
Feat: Enhance device compatibility with Lightning Trainer API
#490 opened Jul 17, 2025 by yishutu Loading…
Removing content-type from authentication headers
#488 opened Jul 17, 2025 by papagala Loading…
4
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