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Nightly CI: macOS package notarization fails with HTTP 403 — Apple Developer agreement unsigned/expired

Status: Open.

#9457 In OpenMS/OpenMS;

· timosachsenberg opened on Jun 7, 2026

MapAlignerPoseClustering: data races when run with -threads >1 (shared algorithm object + unsynchronized logging)

Status: Open.

#9456 In OpenMS/OpenMS;

· timosachsenberg opened on Jun 7, 2026

[aw] Changelog Sync Agent failed (pre-agent)

agentic-workflows

Status: Open.

#9435 In OpenMS/OpenMS;

· github-actions opened on Jun 3, 2026

[aw] Documentation Sync Agent failed (pre-agent)

agentic-workflows

Status: Open.

#9434 In OpenMS/OpenMS;

· github-actions opened on Jun 3, 2026

[RFC] Spatial feature detection for imaging MS (with optional ion mobility)

Status: Open.

#9433 In OpenMS/OpenMS;

· timosachsenberg opened on Jun 2, 2026

ThermoRawFile should support PeakFileOptions

Status: Open.

#9427 In OpenMS/OpenMS;

· timosachsenberg opened on Jun 1, 2026

Add chimeric search to ProSE

Status: Open.

#9422 In OpenMS/OpenMS;

· timosachsenberg opened on May 31, 2026

Parquet IO: improve ProteinIdentification identifier architecture

Status: Open.

#9401 In OpenMS/OpenMS;

· timosachsenberg opened on May 24, 2026

digest of sequence with X might lead to unexpected result

bug

Status: Open.

#9303 In OpenMS/OpenMS;

· timosachsenberg opened on May 12, 2026

nightly Doxygen Docs not up-to-date

Status: Open.

#9284 In OpenMS/OpenMS;

· cbielow opened on May 11, 2026

Try build optimizations with Copilot by Microsoft

Status: Open.

#9282 In OpenMS/OpenMS;

· jpfeuffer opened on May 10, 2026

Off-by-one bugs found by audit: RNaseDigestion underflow + MSGFPlusAdapter substr

Status: Open.

#9231 In OpenMS/OpenMS;

· timosachsenberg opened on Apr 28, 2026